finalized quad chart

3 files changed, 107 insertions, 19 deletions

diff --git a/Makefile b/Makefile
index f475626..81b588e 100644
--- a/Makefile
+++ b/Makefile
@@ -5,7 +5,7 @@
 PDFTEX = pdftex
 PY = python3
 
-PDF = report.pdf poster.pdf logbook.pdf report2.pdf poster2.pdf
+PDF = report.pdf poster.pdf logbook.pdf report2.pdf poster2.pdf quad.pdf
 all: $(PDF)
 
 TABLE = gen/deathtable.i gen/deathtable2.i gen/table.i gen/pvals.i
@@ -33,10 +33,12 @@ img/diagram.jpg img/2019-12-13-3.jpg img/c.jpg img/a.jpg img/code.png
 logbook.pdf: src/biblio.i src/hypo.i src/vars.i src/methods.i \
 src/bullets.i
 
-report2.pdf: src/abstr2.i src/intro2.i src/research2.i \
-src/methods2.i src/mats2.i src/analysis2.i src/conc2.i report2/graphs.i\
-report2/tables.i report2/pics.i imgs graph/depth_width.png \
-graph/nearest_neighbor.png
+report2.pdf: src/abstr2.i src/intro2.i src/research2.i src/rationale.i \
+src/mats2.i src/methods2.i src/analysis2.i src/conc2.i report2/graphs.i\
+report2/tables.i report2/pics.i imgs graph/lineplot.png \
+graph/boxplot.png src/biblio.i img/obstacle-large.rot.jpg \
+img/2019-10-18-1.jpg img/Overhead-with-obstacle.rot.jpg \
+img/corner-settle.rot.jpg img/fake-pits.rot.jpg img/code.png
 
 poster2.pdf: src/hypo2.i src/abstr2.i poster2/img1.i poster2/img2.i \
 poster2/img3.i poster2/img4.i poster2/img5.i poster2/results.i src/research2.i \
@@ -50,14 +52,14 @@ report.pdf logbook.pdf: img/2019-10-30-1.jpg img/2019-11-21-1.jpg \
 img/2019-11-21-2.jpg img/2019-11-21-3.jpg img/2019-12-02-1.jpg src/conc.i \
 img/2019-12-13-1.jpg img/rot fmt/doc.h report/tables.i
 
-poster2.pdf: imgs
-
 report.pdf poster.pdf logbook.pdf: fmt/font.h src/mats.i \
 img/2019-12-02-2.jpg img/2019-10-18-2.jpg img/2019-10-18-1.jpg \
 img/2019-11-21-4.jpg img/2019-12-13-2.jpg
 
 report2.pdf: fmt/doc.h
 
+quad.pdf: src/rationale.i src/hypo2.i
+
 $(PDF): $(TABLE) fmt/com.h fmt/font.h imgs graph/made tables.i
 
 imgs: py/data.py py/data2.py py/img.py
diff --git a/quad.tex b/quad.tex
index ae30634..68722ff 100644
--- a/quad.tex
+++ b/quad.tex
@@ -1,5 +1,13 @@
 \input fmt/com.h
 \input fmt/font.h
+\input tables.i
+
+\definecolor{page}{rgb}{.87,.95,.85}
+\definecolor{text}{rgb}{0,0,0}
+\definecolor{trim}{rgb}{0,0,.50}
+
+\pagecolor{page}
+\color{text}
 
 \nopagenumbers
 
@@ -27,38 +35,49 @@
 %calculate textheight
 \textheight=\vsize
 \advance\textheight by -\titlesize
+\advance\textheight by -5pt
 \divide\textheight by 2
 
-\thespacing=100
+\spacing=100
+
+\parskip=0pt
 
 \font\title=cmr10 at 18pt
 \font\text=cmr10 at 13pt
 \font\bold=cmb10 at 13pt
+\font\cap=cmr10 at 8.5pt
 
 \text
 \adjs
 \let\bf\bold
 
-\hsize=6in
+\hsize=6.3in
 
 \def\pic#1#2{\pdfximage width #1{#2}\pdfrefximage\pdflastximage}
+\def\picturetop#1#2#3{\vtop{\pic{#3}{#1}\hsize=#3\caption{#2}}}
 
-\def\tabrule{\noalign{\hrule}}
+\def\tabrule{\noalign{{\color{trim}\hrule}}}
 \def\centering{\leftskip0pt plus 1fil\rightskip\leftskip
     \parindent0pt\parfillskip0pt}
-\def\li{\par\pre{$\bullet$}}
-
-\halign to \fullhsize{\tabskip0pt plus 1fil\vrule#&\vtop to
-\textheight{#}&\vrule#&\vtop to \textheight{#}&\vrule#\tabskip0pt\cr\tabrule
+\newcount\ct\ct=0
+\def\li{\global\advance\ct by 1\par\pre{\number\ct.}}
+\newcount\cct\cct=0
+\def\alph{\ifcase\cct\or a\or b\or c\fi}
+\def\lli{\global\advance\cct by 1\par\pre{\alph.}}
+
+\halign to \fullhsize{\tabskip0pt plus 1fil{\color{trim}\vrule}#&\vtop to
+\textheight{#}&{\color{trim}\vrule}#&\vtop to
+\textheight{#}&{\color{trim}\vrule}#\tabskip0pt\cr\tabrule
     &\multispan{3}\hfil\vbox to \titlesize{\hsize=2\hsize\centering\vfil
         {\title Antlion Herding Patterns with Interrupted Communication
         Pathways}
         \vfil
         Holden Rohrer and Radeen Abree, Centennial High School, Roswell,
-        Nigeria.
+        Georgia, US.
         \vfil}\hfil&\cr\tabrule
 
     &%#1
+    \vskip1pt
     \vbox to 0pt{\pic{1.5in}{img/2019-10-18-1.jpg}\vss}
     \hangindent=1.55in\hangafter=-1\parindent0pt
     \noindent{\bf Rationale:}\par
@@ -68,10 +87,77 @@
     \input src/hypo2.i
 
     &&%#3
-    textthre teoauhontahue atohue toahue thueoa toue hauo teh uoath
-    teoauh hu tohuethue hue tu tueteueth ettue teute tete t et te te
-    tete tet e te tete tee&\cr\tabrule
+    \cap
+    \def\wid{1.9in}
+    \vfil
+    \line{\hfil\vbox{\picturetop{graph/boxplot.png}{This boxplot
+    illustrates the nearest neighbor metric on different trial sizes and
+    interventions. The artificial pits trials showed the largest impact
+    on the metric, indicating antlions choose settlement based on
+    surrounding pits.}{\wid}}\hfil
+\hbox{\picturetop{imgs/obstacles-24x24.png}{Voronoi diagrams show
+territory that is nearest to a given pit. Blue dots represent pits, and
+colored shapes represent obstructions.}{\wid}}\hfil
+        \hbox{\picturetop{imgs/trails-24x24.png}{Trail erasure did not
+        interrupt, and may have reinforced, the regularized pattern
+        antlions make. Food-catching regions are well-distributed
+        between pits in all trials.}{\wid}\hfil}}%
+    \vfil
+    \line{\hfil\stats{Pit depths and widths remained fairly constant
+    between trials. The nearest-neighbor metric also remained constant,
+    but only within trial sizes. This indicates antlions respond to
+    their environmental restrictions.}\hfil}%
+    \vfil
+    &\cr\tabrule
     &%#2
+    \smallskip
+    \advance\ct by 1\pre{\number\ct.} 24 16oz deli containers were acquired and 1 antlion was placed in each
+    \li The sand (100lbs) was uniformly spread into a $24"\times24"$ plastic container
+    \li Marks were made on the box so the pits’ locations could be observed.
+    \li Each trial was started by introducing a constant number of antlions, at the same time
+    \li After the first and second days of each two-day trial, the coordinate locations, diameters, and depths of each antlion pit were recorded for analysis.
+    \li After each trial, all living antlions were restored to their pits and dead antlions disposed of.
+    \li Further trials repeated these same protocols except with space
+    restrictions of $24"\times24"$ and  $12"\times12"$ and three
+    disruption methods:
+
+    \leftskip.3in
+        \lli ``Trail erasure'' included brushing away old trails in the
+        sand that antlions have dugout, in an effort to determine if the
+        antlions are reliant upon the presence of trials or pheromones
+        when distributing.
+        \lli ``Fake pits'' were introduced to mimic an antlion pit, in
+        order to determine if antlions were dependent on the presence of
+        surrounding pits.
+        \lli ``Artificial obstacles'' included the introduction of rocks
+        to determine if antlions are aware of the shape of their
+        settlement region and use that to organize the group.
+        \smallskip
     &&%#4
+    \smallskip
+This experiment investigated how antlions make individual settlement
+choices, and how those choices create group patterns.
+Environmental factors, in terms of other pits, trails, and environment
+shape were investigated.
+Antlion larvae were shown to regularly, rather than randomly, distribute
+themselves, indicating they avoid other pits and respond to
+environmental structure.
+As also observed in the previous study, antlions use behaviors like
+this, cannibalism, and reclusivity as mechanisms to limit intra-species
+competition.
+These behaviors increase species fitness and therefore are an
+evolutionary advantage.
+Avoidance mechanisms can be extended to the analysis of other animals
+and engineering applications.
+Bottom-up organization often relies on a hierarchical image of its
+members, like a hexagonal or rectangular grid, but individuals don't
+require strict communication pathways for efficient, semi-regular
+distributions such as an antlion's. 
+The distribution patterns of the antlions can also be expanded to
+understand similar organisms, such as termites, ant, bees, and wasps, as
+these animals also distribute as groups.
+Similar behaviors may be used to draw conclusions regarding the
+evolutionary history of these organisms.
+\smallskip
     &\cr\tabrule}
 \bye
diff --git a/src/rationale.i b/src/rationale.i
index 1689537..4bd979c 100644
--- a/src/rationale.i
+++ b/src/rationale.i
@@ -6,4 +6,4 @@ hardware cannot harness the energy required for complex computers, and
 these algorithms can be designed to mimic the response-observation loop
 of antlions.
 The distribution behavior of antlions also compares to other organisms,
-which will illuminate evolutionary genealogical study.
+which will illuminate genealogical study.